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MIKK Panel Genome analyses

Structural variations Nanopore

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birneylab/MIKK_genome_companion_paper

MIKK Panel Genome analyses

birneylab/MIKK_genome_companion_paper

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Nanopore basecalling
Nanopore data processing
Structural variations Nanopore Structural variations Nanopore
Table of contents
- Code
- Data
DNA methylation analysis
Individual MIKK lines hybrid assemblies
Pangenome graph assembly
Pangenome graph usage analysis
Pangenome graph SV analysis
Licence

Table of contents

Code
Data

Structural variations Nanopore

Code

NGMLR v0.2.7
Sniffles v1.0.12
SURVIVOR v1.0.7

Data

Final VCF calls

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