Pangenome graph usage analysis

Code

• minigraph v0.10
• Graph usage analysis Notebook

Data

Segment usage analysis

All Segment Usage plots and tables

Percentage of graph segments normalised coverage by sample

Segments per chromosomes groups supported by at least 2 samples

Number of segments and total length of segments supported by the MIKK panel

HdrR, HNI and HSOK karyotypes of graph median normalised segment coverage across samples

All karyotypes plots

Median coverage HdrR reference

Median coverage HNI reference

Median coverage HSOK reference